Scaffold Ga0181357_1001183

Overview

Basic Information

• Taxon OID: 3300017777
• Scaffold ID: Ga0181357_1001183
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10255
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045757	Metagenome / Metatranscriptome	152	N
F087202	Metagenome	110	N
F099291	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181357_100118317	F099291	N/A	VKKFFTLLLILLICSCSFAQSNITMELKDAPVRTSLEMIFKQAGIKSYVIENSVYGVISMNLSEQPFENALKLVMRANTIPLTYTKENDVYIVKARVFTEYKQSTPEITAEKPKGIMFEKIYLNHIDPFDLQSVFGNILFINQFS
Ga0181357_100118318	F045757	AGGA	MRKILAILGLFFLTTSAFAYQEEKKKDPVYTVISTKYVLTSTIIDDFFRAAKITTYSYNKEEINKIKIPRFQIWEKNFDDTKYLLEKFLSVQFDTDEKKSYYMVKKK
Ga0181357_10011833	F087202	AGG	MNIRNFLVLANKLDKKGNYKTSDKIFKFVKAQIDNLDDDPLGISNIQPSSKQKDPIVDKLRKMVANGEISEAQFWKALEKHKPGTFQNMLSNVGRAGEGDVDKIESNISAQGVKVDPKERDILAQFYELSNDVFVDFINSLQSNFASVLRIMSRKDGLPEMFQEIQDHRAGNLIMELQEPSTKEEFLTREYLELRAKGIGLQDAIEMGTNGEFSDVDKYLKSFVMSQVSEITSKASRITGLRYQEDDVARKLSDVTMNTLNETIDNSLTELYYVYKG