Scaffold Ga0181432_1013487

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1013487
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2030
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036653	Metagenome / Metatranscriptome	169	Y
F045801	Metagenome / Metatranscriptome	152	N
F073426	Metagenome	120	Y
F103382	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_10134872	F073426	AGGAG	MTRLYVALAVTVFVALFYFSYKAPVLTSVPVEKAVDMGIWSESNKGNSLAGK
Ga0181432_10134873	F036653	GGAG	MIPIIVALGTVLSLYVFEPLWFDTRMHYFHQTYETDKACSLAAHQQKDVTGRVCVPKDDHSGHVDLYLTKD
Ga0181432_10134875	F103382	GAG	MNELLITIMLVIPAPHKMVDWTLNEVPTQIQLIHEDGTEVSYNATAVPCKYKPRSTNEMVFVSPQAYEDNRCYSIFDLSSPRFIRHPHYWHGVKNVLD
Ga0181432_10134876	F045801	GGAG	MFWIEIFLSIWALAAVRLLAIGHKLGPLIGWVGQVMWVSMWIYTKQYGFILIDTGLAYIYLEAYFRGKRR