Scaffold Ga0181432_1002884

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1002884
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3848
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012401	Metagenome / Metatranscriptome	281	Y
F012463	Metagenome	280	Y
F027156	Metagenome	195	Y
F029400	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_100288411	F027156	GGAG	VIPKVGQLLRWYDNFDNLKENNDIGVVKEVQFEGVNFFDNDEYAYVVLIDWCKGPHNSYHDQHEYEESVSSGEIVVVE
Ga0181432_10028843	F012401	GGAGG	MIEGLLNLEKAALEKLTEDRIASGSLGAEVEEFLTSAGVYWDMLNQEYFSIEAFQRETFERLAAEYASQDYA
Ga0181432_10028845	F012463	GGAGG	VKIGDIVKLVAEPQVDWMFNYLEETFQVLDFPTENGVELRMIGTVPDWIWIIGKDNLEVTEEEK
Ga0181432_10028848	F029400	AGG	MKIGDLVTFCPEAWGTPLEDRPLGVVMNVEDYRDGIEPATFLMVTAIFPGDDIPYSSNIKDFEVVNEDW