Scaffold Ga0181432_1000479

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1000479
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8388
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007012	Metagenome	360	Y
F016058	Metagenome / Metatranscriptome	250	Y
F018077	Metagenome	237	Y
F033759	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_100047912	F033759	N/A	MIIKALILTTLLTNDPVIIAMPPDKIEARKRNGKGNKGRRRGGRGLR
Ga0181432_10004794	F016058	GAGG	MSKKTEQTMEEVKTNNVAEPVDTDAKAKEAIETLRVQLKEHLQQADYHKTMATKAQGALEVLLQLHPQQENEN
Ga0181432_10004797	F018077	AGGAGG	MTVKNMFSQLEKIFGRQSEAYFIQIINDGLIDIANKKQGYTVSALTDLEKNKRWYDLPATVLSIERVEILDTNDRYIMIPKLTDPHKLLRADTDASNDALK
Ga0181432_10004799	F007012	GGA	MAIIFFCHKCNTKVECETKAEMICDCGHYVKDHDDSRNHINMRNTWSGTTKVEFSETTMDQDIAERNSR