Scaffold Ga0181358_1039700

Overview

Basic Information

• Taxon OID: 3300017774
• Scaffold ID: Ga0181358_1039700
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1812
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010232	Metagenome / Metatranscriptome	306	Y
F010612	Metagenome	301	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181358_10397001	F010612	AGGAGG	MLDGDTPQWEHTVWIMAKVRCRTTHVNMDTAGDEALDDPSEWHVLEFDKGVKHSQEILRV
Ga0181358_10397002	F010232	AGGAG	MRSREELLKIKEAFAYAMMDMLDVYDEFIGTTTRKLWQGQVPTVNDLAKNEEESNA