Scaffold Ga0181358_1007662

Overview

Basic Information

• Taxon OID: 3300017774
• Scaffold ID: Ga0181358_1007662
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4546
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin028 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019614	Metagenome / Metatranscriptome	228	N
F097200	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181358_10076621	F019614	N/A	MNVASIASNKIQVEYSAMPGDNRELLTFKVPNGWDDVKRLTNKVLTHNNKDFTFSGWNSDRNECYF
Ga0181358_10076626	F097200	N/A	MTSNLASLKKLQGHNREQLFKSLYETNHSDCVVEVIKTRRKPDVCIKRNGVVVHNISVKSADKVIQWELKSYNKLLSLYDNSHLIMEFMNIRTQNDKPTQKQLFVDYFPRVIAYLSDKHNFKQFITKHFTNNNEVDLLAVGNGINYNIYNFQQILDYMTNNYVVRNSEQQVQINTTNGYLMFSIEIRSDKKAMLVRQDVTSLQRILKHITPVDIVPXIX