Scaffold Ga0181430_1006693

Overview

Basic Information

• Taxon OID: 3300017772
• Scaffold ID: Ga0181430_1006693
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4139
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030729	Metagenome	184	Y
F070308	Metagenome	123	Y
F095400	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181430_100669316	F070308	GAG	MKVGNLVKRRDPSWDTQNQLGLVIDLETVKQVHRATSEVAKVQWLGGEYPPFMYRANDLILVSEAK
Ga0181430_10066932	F095400	AGG	LIKIEGKYTGFKERIILKLNRIASGCSERAGKDLHPLNDDLIPWLETNEDISEYLDLLDTLTLVRW
Ga0181430_10066938	F030729	AGGAG	MKVTKKKIEAILQQDERMKWVSLWYDRAAKQWVFVGGDSAMWSTSGTGIFRLDMLSVEEWVDYAYQLAGRERHVQ