Scaffold Ga0181430_1006382

Overview

Basic Information

• Taxon OID: 3300017772
• Scaffold ID: Ga0181430_1006382
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4249
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041192	Metagenome / Metatranscriptome	160	Y
F041441	Metagenome / Metatranscriptome	160	Y
F062164	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181430_100638211	F062164	N/A	MAGKKGRSGGARPNSGRPSKGEVINIRQILDDNIDVDVVIQKLLERIESGDQRAIELFLKYRAGLPKQEIDIHTTGEVDHNITLKGLISFEED
Ga0181430_10063827	F041192	GAG	MECLEYMSWALKGNHLRVYPVATKENYTHKVGKKTVNLSYVKLVIEIGNAKHMGKEIYKQHLMHEKVCEIYKHYYDNHKAKK
Ga0181430_10063828	F041441	N/A	MDTKTELLLDYQEMAILALREEVAKLTKENELLTLKLKNNERI