Scaffold Ga0181343_1116641

Overview

Basic Information

• Taxon OID: 3300017766
• Scaffold ID: Ga0181343_1116641
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 752
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000852	Metagenome / Metatranscriptome	860	Y
F009685	Metagenome / Metatranscriptome	314	Y
F088889	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181343_11166411	F088889	AGGCGG	MKTREIKVAEDLVNLTEDHWFNPAILARYLTGQPFFTVDRIMELVAQIIRWEANRYNDELTTEEGIYNSGLTSEGLFLANELNQTLNKLI
Ga0181343_11166412	F000852	AGGA	MQTKREYLKQQGITVGVRGRFSGAAKVAIQEALNKGLTFTDPQPVTKKAK
Ga0181343_11166413	F009685	N/A	RMKMSDQHIDAVLTEAQKLLWGGSETENIAAHNLISKLIQDRMSEKNLN