Basic Information | |
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Taxon OID | 3300017766 Open in IMG/M |
Scaffold ID | Ga0181343_1049634 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1237 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003805 | Metagenome / Metatranscriptome | 467 | Y |
F017122 | Metagenome / Metatranscriptome | 242 | Y |
F043896 | Metagenome / Metatranscriptome | 155 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181343_10496341 | F017122 | N/A | LSPVMEVVPFQEKQDPELRLGEGRSRTSAADTQLFELTIWLPGQGAMRDLVRAESLKQAIDFAQNRYPNCKVEVPSTAAKKPKLARAKNGPRETARRRLKLVEQKREHTDC |
Ga0181343_10496342 | F043896 | GGAG | VSTQIADWARQGWGSTIVDQNRADLLEKLYQWDGRSNPDHPFHHTYTGLYQKYNQR |
Ga0181343_10496343 | F003805 | N/A | MRPIEHSPESSFHKAATDQWLVSLFNKQDYRGLLEAALVLNTLHQLERTKSAWAIREAADNLADHFGLDRDSA |
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