NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181343_1003909

Scaffold Ga0181343_1003909


Overview

Basic Information
Taxon OID3300017766 Open in IMG/M
Scaffold IDGa0181343_1003909 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5291
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009071Metagenome / Metatranscriptome323Y
F029435Metagenome / Metatranscriptome188Y
F038911Metagenome / Metatranscriptome165Y
F067687Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0181343_100390914F029435GGAGMTKQELKELITPEFLSTLHSAVECCNWKVDMIETMEFCNWCYRLAGQPEPYYDVDFEMEDEE
Ga0181343_100390917F038911GGAGMNVEKVKFVTITRVIDARNGIHYLDAIDVNGNHWTAEMDSRQEKWLVYIKGWKKDPQQPLDL
Ga0181343_10039092F009071AGGAGMPFFPDCYDEWGLYKITYDGDHKMYEMLFEGTEDQCRQYAYDNYTDKEYYQMCLMDWEAREWDV
Ga0181343_10039097F067687N/AMTNLSPQAQAIIDAADEVFSNGGTIREGFAAALRVLADNVAPENYACFSGHREWDEALETRNESIREAILDIATELKAI

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