Scaffold Ga0181343_1003909

Overview

Basic Information

• Taxon OID: 3300017766
• Scaffold ID: Ga0181343_1003909
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5291
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009071	Metagenome / Metatranscriptome	323	Y
F029435	Metagenome / Metatranscriptome	188	Y
F038911	Metagenome / Metatranscriptome	165	Y
F067687	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181343_100390914	F029435	GGAG	MTKQELKELITPEFLSTLHSAVECCNWKVDMIETMEFCNWCYRLAGQPEPYYDVDFEMEDEE
Ga0181343_100390917	F038911	GGAG	MNVEKVKFVTITRVIDARNGIHYLDAIDVNGNHWTAEMDSRQEKWLVYIKGWKKDPQQPLDL
Ga0181343_10039092	F009071	AGGAG	MPFFPDCYDEWGLYKITYDGDHKMYEMLFEGTEDQCRQYAYDNYTDKEYYQMCLMDWEAREWDV
Ga0181343_10039097	F067687	N/A	MTNLSPQAQAIIDAADEVFSNGGTIREGFAAALRVLADNVAPENYACFSGHREWDEALETRNESIREAILDIATELKAI