Basic Information | |
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Taxon OID | 3300017766 Open in IMG/M |
Scaffold ID | Ga0181343_1000673 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14459 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (51.28%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004314 | Metagenome / Metatranscriptome | 444 | Y |
F029416 | Metagenome / Metatranscriptome | 188 | Y |
F029725 | Metagenome / Metatranscriptome | 187 | Y |
F071172 | Metagenome / Metatranscriptome | 122 | Y |
F080645 | Metagenome / Metatranscriptome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181343_100067310 | F004314 | AGGA | MYDDYDLDYTYGNDNAYDLDEQDLDEEYARDGQDYESLAYRHYA |
Ga0181343_100067315 | F080645 | N/A | MTKLLTSEQVSNLLQDHCYRVINEMDQDDLFSYAVQMMMQSFDQNPGQGDTDVAMLIEDIWVAEGEDDDSTLEFIAGAVGDELAEEIMKTTQF |
Ga0181343_100067317 | F029416 | GGA | MSDTLSKNIYRQLFTEDQWDMIYNFIGNALDVEEYNPEDVYAIRNKIHLLFENA |
Ga0181343_100067319 | F029725 | GAG | MTNRTELEWFLKEKCREDPDLLDTVISEYVWNMSESKLTELEDFLSNNFGDE |
Ga0181343_100067320 | F071172 | GGAG | MNLTSQQLNQLVENYAERIVDEMDVKCLVQFAYDTIVENMSNMGPEDVLNEIAGVYDEEILQELVESVTP |
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