Scaffold Ga0181343_1000349

Overview

Basic Information

• Taxon OID: 3300017766
• Scaffold ID: Ga0181343_1000349
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21173
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (51.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F021760	Metagenome / Metatranscriptome	217	Y
F036207	Metagenome / Metatranscriptome	170	Y
F041726	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181343_100034918	F000744	GGA	MSEINVQLNVHEIGVILSALQELNLAQEHRIARDYGSVPALYNKLYSSFERMDTSQTGLRYDLTPSF
Ga0181343_100034921	F041726	N/A	MKNYRMVIEYWVPDEDENLFEEKLIRSRSSCGKIADDYLAQDRTNLIRSVEVTPV
Ga0181343_100034927	F036207	GAG	MINFVSGTIFGVIVATIGFGPIAQTLDGLMLNLQKTTVEMNAPKLPPP
Ga0181343_100034935	F000345	GGAG	MTKPNELGKALQEWWDSDAYKELQKESEEAKQRAVGKYFMLSESDKLDMVQAICYIMCKAESEGTSHRGLQDALGIYPSGFWVDHLMEVHNSLYEYYDKRKQKQELEQDIETLKSFLEDKDK
Ga0181343_10003495	F021760	GGA	MLLRSSQLIPMCGPAFDYTREDFLNDASPEEWDAWEKKAAELELPLDYYLAEFV