Scaffold Ga0181410_1013593

Overview

Basic Information

• Taxon OID: 3300017763
• Scaffold ID: Ga0181410_1013593
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2787
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001416	Metagenome / Metatranscriptome	699	Y
F030418	Metagenome	185	Y
F042801	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181410_10135931	F001416	AGGAG	MPLVKKRIFLAAGATSDQVLAGTTYEYVDPNTVIRVAAAVDTAGTSATADTSMD
Ga0181410_10135932	F030418	AGGCGG	MGIFDAISNIAEMAVDPLIALATGGPSAAVATVGQPPERTQTFETSRSNNNMYQQDPGLSQGFSGVAPSTASAGSGSFFGNLGQTIGGFGRDVGGFVSDIAPALNLFGIGGGAQAMAPQAAQTVIRQRPDETAQSGEILGANLGMAPALFQAGRNFFRTPGGQTALGFGGAALGAAFAGDQGSAPRITRKMKSDVRRIYMMAGMNPDVTAQILNNMGTYPRMNFNASLVFFILTKRFRNDGPVVTKAAVRKTKTTLRRMKGVVDMYNSVCKPTTRRAPARRAAPKAVQLIKN
Ga0181410_10135936	F042801	N/A	QNGAPRITRKMKSDVRRIYMMAGMDPNATAQILNNLGTYPRMNFNASLVFFILTKRFRNDGPVVTKAAVRKTKTTLRRMKGVVDMYNSVCKPTTRRAAPRRAAPKAVQLIKN