Scaffold Ga0181422_1026865

Overview

Basic Information

• Taxon OID: 3300017762
• Scaffold ID: Ga0181422_1026865
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1883
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005315	Metagenome	405	Y
F039351	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181422_10268652	F005315	AGGAG	LTKQSQAYPYLLNAKITNLAQSGASEYLITTQIEQAVKLKPDLIIVGHTSEYRWEVWDVRNKIQQGFLVANHVLKNEKYYRQWNLSEQILCNTRNRKEHKAAWHAAGMLYFSDVDLVQRIWSGAVAKQIILAQRANIPMIHHCCFPHLQALLEELTDDYIDFHLDLEKHKDMAPDNSHAGAKSHKKLANMIMNKLS
Ga0181422_10268653	F039351	N/A	MVTGDSWSAGEWDPTLTPEETRAFAEKYSISRYLRDLGHEVAHAANPGWGDFVSLSCLMSHEIGFDFVVYVKTCATRDFKHLTPEHHRAYTTTDLFEKINLVKELEYKILDQYKHKLILLGGIEKIEPEFTCYLKIPSITEFFYPDFVDTTIFGDYTHFEKYSDNDKRGAMNIWELWECKHNFWKEHPEHFASATDQVHPNRKATKALAEFIHNHIS