Scaffold Ga0181422_1013155

Overview

Basic Information

• Taxon OID: 3300017762
• Scaffold ID: Ga0181422_1013155
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2754
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030435	Metagenome / Metatranscriptome	185	Y
F053299	Metagenome / Metatranscriptome	141	N
F059965	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181422_10131552	F030435	GGA	MNNKDILDMCRRLASKYYNHQDYDDIVSEGVVLCLNMRAEGIKEPSKLYYSARTAMYEFVNVGMSKLSYPKGRSGRVASDDDVFEYVDAQEEQIPAEDLFGSYELKDSIQVLKKELSPKEWRLFMVLYNNNNNLTEASKVLNVSRQAVEQIRNNIRYKLVTICDLAI
Ga0181422_10131553	F053299	GGAG	MKNYKPYYRTDKMKQEELRTAKYVSILFFTVIGFSFIGFSFVLVKAMLYMTGLFL
Ga0181422_10131556	F059965	GAGG	VSTVNLPPSMEMELMDLGILKSDTEELESIAEQTGFYALRAETIAWHNTLIVDGEVMF