NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181414_1002721

Scaffold Ga0181414_1002721


Overview

Basic Information
Taxon OID3300017759 Open in IMG/M
Scaffold IDGa0181414_1002721 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5165
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001740Metagenome / Metatranscriptome643Y
F008944Metagenome / Metatranscriptome325Y
F041211Metagenome / Metatranscriptome160Y
F077194Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0181414_100272118F008944N/AMKKFNKMESHLIVDALTFYVAQVESDILQMEKDGKRSIFAPGFYTQISKELKE
Ga0181414_10027214F001740N/AMYNVNNPSNWSWSKAFDEMAKTVNQAELTQQSINHVLNYPGEANGLFMTLSKNQQDDVYEILNQIL
Ga0181414_10027215F041211N/AMSNNLNTTIDKVAMSEFDMHYYQLGDNEKQWCNNELTNNPKWLAPFWKQEGYQSEVDSWG
Ga0181414_10027216F077194N/AMKTKQYPNQTLTVLDFGSGEIHQYHDVDYEKYQMELDEFVGVQLGYNLNEVEYMFHTDKTIYDLTNEL

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