Scaffold Ga0181382_1003511

Overview

Basic Information

• Taxon OID: 3300017756
• Scaffold ID: Ga0181382_1003511
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6404
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (31.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001724	Metagenome / Metatranscriptome	645	Y
F030401	Metagenome	185	Y
F072256	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181382_100351114	F072256	N/A	MKSKIKDILIQDPFVRFDPEPHKYYDLKRKKYVARSISEVVKETTYVSKAMEKAAVRGTAIHEAAQIWCETKDKTLALAYAKDYSQWIEHLINYRMWNTWECVVNELRMVDRKRDIAGSCDVILQHKDTGMLCLADFKTQDVYKKKNHRLQMGGYVSLLYQNYPGIDLWSCRVIYITPDGIKTQDYNPQECMYDYEEARGLYFGKQLPF
Ga0181382_100351115	F030401	GGA	MQRIFNGSAKRTLQKMVDKGLMKVSDLDTPSEGWFIAMGYDRDKETGKWKRLLRTKCGATPSLRLEQIPKWTNTLTGKVTFDPVEYEKQN
Ga0181382_10035112	F001724	AGG	MAIMTEKRVMQAESSKKIKELDDEKPDYQEKITFLISTVAQGFILAWCLLVLSLGYIKLPNKLFGIDIPDQPRVDSTFAAGLLGNILGGLGISVNAAQGAKKKKKEGENSTISNSNGGVSTIIIKQPIELITTKPEVIKIDPKLNK