Scaffold Ga0181344_1036338

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1036338
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1496
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001739	Metagenome	643	Y
F003265	Metagenome / Metatranscriptome	496	Y
F008998	Metagenome / Metatranscriptome	324	Y
F050321	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_10363381	F050321	GGAG	MITFDKWYGLVRPTHTATQLAFDKAVEKVQEEYRYAVEANKLEWKTLEAELEMYDKKARQHT
Ga0181344_10363382	F003265	GGAGG	MMRWFFVPLVLLVFWASAKTPCIISDFYGLSWIHEPTLRHIELSRWLTTNGDSCNSDQLVVIWNNLAMWAGVADSAELRAKILYYYARAVEREKK
Ga0181344_10363384	F001739	AGAAG	MATTFTTRITAMYTLDTPDPGFVVNVLWTVTGVDGSYTAEIGGNSQFTVQEGTFIPYDQLTQAQVIGWIPAEQIASAQACVQGQIDSMITPPVSPQNTPLPWSA
Ga0181344_10363386	F008998	AGGA	MTTFTTRITAMYTLQQPDPNYVVNALWEVTGVDGIYTASLGGNTRFNSADQEGAFIPY