Scaffold Ga0181344_1009668

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1009668
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3122
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034802	Metagenome	173	Y
F067521	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_10096686	F067521	AGGA	MTQFNPVEMESKIKQEYLREMKYPSREQLMAEVAVLTELVRVLSDRISELEKK
Ga0181344_10096687	F034802	GGAG	VNKKEAHELLDARRGGLSVLPSAIDTALFLTGDLGGNALVFSEGMDKSLQQESPRCWQSKGYDVVAQSGRYYGSQAWFDVHYGVKAPHEPNKEQQ