NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1005646

Scaffold Ga0181344_1005646


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1005646 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4191
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006842Metagenome363Y
F014116Metagenome / Metatranscriptome265Y
F017469Metagenome / Metatranscriptome240Y
F075713Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0181344_100564617F014116AGGAGGMAENSADIAKRIILNCVAEAFTIEQACASAGKSMKTYEYYRRTDKVFADKI
Ga0181344_10056462F075713GAGGVKVKKVLEVLNDLPLEEDLVIQWYRKQDVESNLQRKITREVWEDVCSYACDEPDMSDFSIPYLLDRMERDSE
Ga0181344_10056464F017469GAGGMKTICQFCGWEITKPEWYNTYNGGYACDDCLMDQAIEREKENANG
Ga0181344_10056466F006842GAGGMKVIPAFCGDHLVPIDQCDCLSYMKEIRQSAEKLIQLTKEREELSK

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