Scaffold Ga0181344_1005646

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1005646
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4191
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F014116	Metagenome / Metatranscriptome	265	Y
F017469	Metagenome / Metatranscriptome	240	Y
F075713	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100564617	F014116	AGGAGG	MAENSADIAKRIILNCVAEAFTIEQACASAGKSMKTYEYYRRTDKVFADKI
Ga0181344_10056462	F075713	GAGG	VKVKKVLEVLNDLPLEEDLVIQWYRKQDVESNLQRKITREVWEDVCSYACDEPDMSDFSIPYLLDRMERDSE
Ga0181344_10056464	F017469	GAGG	MKTICQFCGWEITKPEWYNTYNGGYACDDCLMDQAIEREKENANG
Ga0181344_10056466	F006842	GAGG	MKVIPAFCGDHLVPIDQCDCLSYMKEIRQSAEKLIQLTKEREELSK