Scaffold Ga0181344

Basic Information
Taxon OID	3300017754 Open in IMG/M
Scaffold ID	Ga0181344_1002874 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017754 Open in IMG/M

Scaffold ID

Ga0181344_1002874 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6048
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6048

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (16.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.2382	Long. (^o)	-86.2805	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.2382

Long. (^o)

-86.2805

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019119	Metagenome / Metatranscriptome	231	N
F032245	Metagenome / Metatranscriptome	180	Y
F077051	Metagenome / Metatranscriptome	117	Y
F077197	Metagenome / Metatranscriptome	117	N
F078606	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100287411	F019119	GAG	MTGSSLGTQFVIYFDKEMEQKITHEMLELSANIAKEHYELTDNVDRNLNYLWYMYHKGSKVGTFRPFVYMAELQLLKRMGYINDTEIKNMIAMLESSDQENLHMVTLSIKSFRDLRVKEHGEYSKVNQAYWKIAKDYPHEILNHEVFMKTMSPAN
Ga0181344_10028742	F078606	N/A	MIKFKLFLVAAAGTLVSWLLIKTFILNINVLQFIAVEFIVGFSHYVYNDVKLRFTE
Ga0181344_10028743	F032245	N/A	MVMGEIFFKMINAGLTPNEFYVLYCIYHKITPDKSVNASLEIAKLKSGNYLTKDLELSGNSLKFMQEIEVYFKKSKKKTSKTLMGDEFLENIKTYNECFPATKLPSGVYARVNVKSLENAFRWFFQEFNYSWETVIQATEKYVEEYAINRYNYMRNSQYFVRKQNTDKTWDSNLATYCDMISQDDYEAPVFFKEKIV
Ga0181344_10028748	F077197	AGAAGG	MFLPIEFRDEQGPYIEHLNVTHITRISFVNPRNPDAGSKIHLRTGEILKTSMAFDQLSQAIDETWESAASLVLSSLLSEKAKLVAGSPHSEESSELQEEFEA
Ga0181344_10028749	F077051	N/A	MTEHDLTILDFNKVEIKDKDSQNGYDYYYYTLDIFENLTLCSVDSDRVEDDNWFVINLDWPDHFKLQTLLEVQSFLQSVGYQQPV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181344_1002874

Overview

Ecosystem & Geography

Associated Families

Sequences