Scaffold Ga0181344_1001990

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1001990
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7373
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (23.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037129	Metagenome / Metatranscriptome	168	Y
F047578	Metagenome / Metatranscriptome	149	Y
F048842	Metagenome / Metatranscriptome	147	Y
F062545	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100199011	F048842	N/A	MKNNNWVIVLPILIWGALIFGELRCIYKMCTCNWEPVGKAEAVYTVGTFTGLGVVIGYLDIEDK
Ga0181344_100199017	F047578	N/A	MKAICIDASNKPAKIPQHEWIKEGETYTITKVVKMGIQDGKYGVLLKEVQLSQQSFPYELYDADRFIPLDIRLHQEEKEAVKEADLELI
Ga0181344_10019902	F037129	N/A	MSVNKKDYKVVDVQYGYETRYVVKKKFLWFFWKTIKNHSGYDMEYSTKRAAQAYINFLR
Ga0181344_100199021	F062545	N/A	CTTNIIEGDTQTYIIDGQHLATALEREGQPIPYIEIQIESEEDLVEKMAYLNNSSKSWDLMNYINAWKMIRPDYMKLFKWKNMYDIEISMLACIASNMPSIRFGTQPIKNGTFQISNQHAETMCKSFNDIFLKIGMAERSVKFQFLNAFMQAYNSTYSHDKVMAAIDKHMKTIKLMASGDETGTYIRKQIFKLPK