Scaffold Ga0181344_1001145

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1001145
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9857
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003038	Metagenome / Metatranscriptome	511	Y
F012010	Metagenome / Metatranscriptome	284	Y
F019119	Metagenome / Metatranscriptome	231	N
F038206	Metagenome / Metatranscriptome	166	Y
F077051	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100114514	F038206	AGAAGG	MFLPIEFRDKEGPYIEHLNVTHITRVSFVNVMNPDAGTKIHLRTGEILTTPAPMDIISQKMDECWKSAATLVIFNILAEKAKLVNGDELSESQENDLHPL
Ga0181344_100114515	F077051	N/A	MTENDLTDLGFSKVEINDLESQNGYDYYYYTLEVFNNLTLSSVDSDRVEDGHWYVFNFDWPMQFRLDTKEDVSHFLETLKVHLHSQA
Ga0181344_100114517	F019119	N/A	MTESYPGTQFVIYFDKEFDKEMKQKITHEMLELTADIAKEHYAITEGVDQNLNYLWYMYHKGTKSGVFKPFVYMAELQLLKKMGYTNDEEIKNMFAMMESTDEENLHMVTLSVKSYRDLRHKEHGEYSKVNKAYIDVTKNYSYEILNHEVFLKTMSPYTS
Ga0181344_10011454	F003038	N/A	MALSTTDLGTGGSGLAKTIAPGNHTLKINSIFLEDFTFIEGAKHLMLNVETEPIEGFEGFMIDKDDESKGRHAGQIGRVKASQYAFADGETKSGIKIQRDRSIMIFLQNLCKTLGINEWFIAQDGLHDTIDDLVAAFNKNAKFQDHYLEFCVAGKEYVGKTGYTNYDLYLPKGDKGKYAYGEIEGGKVVPYSEALHLKKAEVKEVKAFGDDDLSIPSKTSSDFSLD
Ga0181344_10011459	F012010	N/A	MTEIFNRLVQEDLTPNAYYVLHCIKEKVVPHKFINKELQVEKLKRDNWLNQDLSLTSKSIIFMEEINGFFKRTKKKTSTDLMGSGFLQQIQEYVELFPNRKLNSGKYARVNAKNLEAGFRWFFENYDYSWDLIIKATEKYVDEYSIRNYEYMRNSQYFIRRQNIDKSFESDLATYCELIKTNPDDTGNPYFTERVV