NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1000927

Scaffold Ga0181344_1000927


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1000927 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11228
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014726Metagenome / Metatranscriptome260Y
F016141Metagenome / Metatranscriptome249Y
F030057Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0181344_10009271F016141AGGAMTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQSRQGFATGTTFTYRGYTALNAGTTAGGAMEKLQTVLNSGVLEISFAQKLYYQIARPFIQCPAGFGIDIQSLASTRTGVAAETQACDTNWIARPDYRATGVYNIDPIQIIEPEIQIQAAIKFPNGNTPNFTNTALDTADGQQTPSIELGLIFDGYVIRPSQ
Ga0181344_100092713F030057N/AMAVTYKVAKALNGGLWKWIDGEEKVFTILGPIRAGRVVDNPRNGIAKAPDILNVRDAADGNEKEVLVGQVLKSTLVENYPDDSYVGKTFACTQSAPPAGKRYKSMTINEVELEEAPAKKAKK
Ga0181344_10009272F014726N/AMGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYVTYPSAGSTELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQINDNNVDTFTRANIADIDTHATATDYLGGFVQAGVLNFSVGSRPFATIVKPFQYAPPPGSPLDLENSYVNQIGAVPTATGGANQVVGVPWVSQTKMRSNVYFTDPNILIEAEQQFNVSIQFPSGAVPVLATSVTNIGGANANPYKIGIILDGLLLRPVQ
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