Basic Information | |
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Taxon OID | 3300017754 Open in IMG/M |
Scaffold ID | Ga0181344_1000798 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12144 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (38.46%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 8 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000922 | Metagenome | 833 | Y |
F001964 | Metagenome | 610 | Y |
F002227 | Metagenome | 580 | Y |
F028148 | Metagenome | 192 | Y |
F030733 | Metagenome / Metatranscriptome | 184 | N |
F086598 | Metagenome / Metatranscriptome | 110 | N |
F086618 | Metagenome | 110 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181344_100079811 | F001964 | AGGAGG | MSRNLFAPPRFKVQVSGAIGWSDLKERVISYRTLEYPTRKEAEATARELNPGEYTQGRIRVVPVEVPEDYDVYPTPERTKP |
Ga0181344_100079814 | F002227 | N/A | MKLTIQSKQNAQTIIDLFNAIITGECEEHQATPMSIYDDDKHICSIVAANGEQILELIIEREAGDKLIQTCEPEDAP |
Ga0181344_100079818 | F028148 | N/A | MKTIHQIIREIQFFDPAIRAFDAHDLPQSVRAYLHHNYRMDARLDDEEQQLVETSFEPFADNLREAFQDDPRPDATRFYLFDDLSLYVKTNAGPELWADAQVFVVERILPQMRLTRMEADLMREIGMDEQVSEVRDDFFSSFAHVLHRDCGIPYSDAREHWNAWSNQLSDSACESIVLGGSESGRAEGLRFASEYTVKA |
Ga0181344_100079819 | F086618 | N/A | MASIQRIENAVNNLINGNLSDARRSARGLSYSEVFNWLTYSVGWSEKRSRACADYLIGRIDYRTYCNADR |
Ga0181344_100079824 | F000922 | AGG | MTSEQWTKAKSLYLAGKTWKAISSDLGLNQSTLLSKASREGLPKVRKEMRNTVSSKETVSLESLSVLVRSKLAADAASTLERIEGYSLDGIKDESTREQILGSVAKRSALVFGWSEQGEAASVSINLLGSMPDKFHVEQVVSEPPDK |
Ga0181344_100079826 | F030733 | N/A | MTLRIGSGWIISHRVVDGWPTTTQITSVYIFHLMSCPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGENGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRTWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPIFPLYIGLEASQRIAQNNPAFREDLRQADMGSGSGAELLKRIGAN |
Ga0181344_10007988 | F086598 | N/A | METEKSSVLKDQLEKAATMFKRISESVDRIEKTLKEHERKIDEALQRSSCQDDTDIDTWEGFGPKPERQPFNPNAETYTLELHHGPYTIRRDDGESDKEWQRRKDHLMDQRVTFLNGSGVNGTPEQVAYLQRIEERLGRKIFKYPLATT |
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