NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1000798

Scaffold Ga0181344_1000798


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1000798 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12144
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (38.46%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000922Metagenome833Y
F001964Metagenome610Y
F002227Metagenome580Y
F028148Metagenome192Y
F030733Metagenome / Metatranscriptome184N
F086598Metagenome / Metatranscriptome110N
F086618Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0181344_100079811F001964AGGAGGMSRNLFAPPRFKVQVSGAIGWSDLKERVISYRTLEYPTRKEAEATARELNPGEYTQGRIRVVPVEVPEDYDVYPTPERTKP
Ga0181344_100079814F002227N/AMKLTIQSKQNAQTIIDLFNAIITGECEEHQATPMSIYDDDKHICSIVAANGEQILELIIEREAGDKLIQTCEPEDAP
Ga0181344_100079818F028148N/AMKTIHQIIREIQFFDPAIRAFDAHDLPQSVRAYLHHNYRMDARLDDEEQQLVETSFEPFADNLREAFQDDPRPDATRFYLFDDLSLYVKTNAGPELWADAQVFVVERILPQMRLTRMEADLMREIGMDEQVSEVRDDFFSSFAHVLHRDCGIPYSDAREHWNAWSNQLSDSACESIVLGGSESGRAEGLRFASEYTVKA
Ga0181344_100079819F086618N/AMASIQRIENAVNNLINGNLSDARRSARGLSYSEVFNWLTYSVGWSEKRSRACADYLIGRIDYRTYCNADR
Ga0181344_100079824F000922AGGMTSEQWTKAKSLYLAGKTWKAISSDLGLNQSTLLSKASREGLPKVRKEMRNTVSSKETVSLESLSVLVRSKLAADAASTLERIEGYSLDGIKDESTREQILGSVAKRSALVFGWSEQGEAASVSINLLGSMPDKFHVEQVVSEPPDK
Ga0181344_100079826F030733N/AMTLRIGSGWIISHRVVDGWPTTTQITSVYIFHLMSCPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGENGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRTWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPIFPLYIGLEASQRIAQNNPAFREDLRQADMGSGSGAELLKRIGAN
Ga0181344_10007988F086598N/AMETEKSSVLKDQLEKAATMFKRISESVDRIEKTLKEHERKIDEALQRSSCQDDTDIDTWEGFGPKPERQPFNPNAETYTLELHHGPYTIRRDDGESDKEWQRRKDHLMDQRVTFLNGSGVNGTPEQVAYLQRIEERLGRKIFKYPLATT

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