Scaffold Ga0181344_1000538

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1000538
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14910
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004670	Metagenome	428	Y
F005027	Metagenome / Metatranscriptome	414	Y
F013185	Metagenome	273	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100053816	F013185	N/A	MSLETSAEITGLKQALSELSKLDKSARFKAAAKIKASSPAMLEEGRKQFPSEIGVSMIRGWGNKGRLGYNKTAVDKGVQIMVGGRARGQGITPLVTLVQKDAAGALFSQAGTKNVSDFSKLLTNVFGRPQRGLWRSRKFIQEQGTADIMKAVDEVIADANRALKARQAV
Ga0181344_10005386	F005027	AGG	METSLGELIAKLTNLSHNLALELRFKDSSLVLEAVGALHAIPTLAEKVRDSWHPSLNTSGASKGFNYLSTVKLADDE
Ga0181344_10005388	F004670	GAG	MTYQELPLFRATDPETSRQVSPIRVGTHRALLLEQYFHATLGLTDEEAGMRAALAGHDIKGYWKRCSDLRTMGLIQDLGHSRRLSTGSQGIVCAITQQGMDMVRGWA