NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1000299

Scaffold Ga0181344_1000299


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1000299 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19954
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (97.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001629Metagenome660Y
F022398Metagenome214Y
F079703Metagenome / Metatranscriptome115Y
F091308Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0181344_100029912F022398AGGAGLTPLNSGTLIAKAWEALHEFGKITAQEFADYADIGRYDAHAALAKMNKRTKDGVKRIYVAGWTYGHDDARRYPRPVFMIGDLPDKPRPKPDVAANRRRSELKRNRTFRMSSVFNMALTRDKIRELRRSL
Ga0181344_100029913F091308GAGGMKYSQAKPLVEQLMSLAVLYHASPTMLREKIYNALDEFLPDLDEGCRERGCIAVDDFKEKNT
Ga0181344_100029914F001629AGGAGMNLNQGALAQGLVDDLLEAIHKYDETLYMSTVIGVLEIVKQHLINDSLENSDDED
Ga0181344_10002992F079703GGAGMIDANKLQYFTTAAWLRGYAEGLDEYEHKSLIHKLNQAADLLDYVWGRYVDEQQDGEK

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