Scaffold Ga0181344_1000243

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1000243
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22387
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (77.42%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010601	Metagenome	301	Y
F018508	Metagenome	234	N
F021491	Metagenome / Metatranscriptome	218	Y
F023804	Metagenome	208	Y
F046244	Metagenome	151	N
F052462	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100024310	F052462	GGAG	MTRPIGISVPHRKVEDDDDIQTYKRAWVSLNDEQIHKCIAYAKGGCDIEQTAKNIELTLKGLNYD
Ga0181344_100024314	F021491	AGGA	MSVEKKIEEIVLGYLKRAEGRIAIMSPQDIAKLVRDAAHKGAMLGYDAGMQMARRSHGNELEVAELTVKELTERVKELEMQMIAQQ
Ga0181344_100024316	F023804	AGGAG	MLEDLYRIIIEVEGVTLVCFLEYEPEELNYGDAPDVPECMNLLSASCGDIDIAHILMQSIVDHICEEALTQFNSESE
Ga0181344_10002432	F010601	N/A	MLSQWANGDLELTQELRAGKVPVCIREDYTVYLEFFKGNLWIHVDIKRWSTGVKKDCLKSIALIENLIGKPLVALIREEDIKLVRFAKSFGWSEKCQISLLDGSKAFIYTNKV
Ga0181344_100024323	F046244	GGA	MIDEERNAMREHIVWLTRELEDTRTKLKIRDELLSELLDPEQLGHAVTNEVRGRIYTLLHLQENN
Ga0181344_100024329	F018508	GGAG	MVKKSLSKALGGLKQPDFPMNAFDVFMNSRLVELSVVKRQHEKRWGINRLIELVDSEFRIKVWRQAERVFEASKSRDEVKLDRAVGGMVKAYAALEAWAVENGVPEMPAIVAVEHEMQDGSVMVVVGNHHDATLYQQFRPDVQNRHIWTMEELELIMDSPVIKETMKIKALMPCASMVRLDKDAKEFPLGGATGFDDVKSDELEASSLPKVFDTSKMVKNTANRALEEI