Scaffold Ga0181407_1003065

Overview

Basic Information

• Taxon OID: 3300017753
• Scaffold ID: Ga0181407_1003065
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5103
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033796	Metagenome / Metatranscriptome	176	N
F053299	Metagenome / Metatranscriptome	141	N
F072342	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181407_10030653	F072342	AGGA	MSKHTEWEKARVKKQMKTKKVLKQMSDEQREAIEEIQKSVASCLEMIKDCNDLYMSDVAKLESSWHSLRWAFEVDKV
Ga0181407_10030654	F033796	AGG	MAENKTYKVAGVHIGKKGVTVLEGNKRVLEEAEQSAKYLSGKYALENSLGITNFVAFNTHALTMLPPYSIDMEAEWNYVVEQEGDDTPSVEINRQIGGSI
Ga0181407_10030658	F053299	GGAG	MSKEYKPYYRTDKMKQEELRIAKYVSILFFTMIGFSFIGFSFVLVKAMLYITGLFL