Scaffold Ga0181400_1009744

Overview

Basic Information

• Taxon OID: 3300017752
• Scaffold ID: Ga0181400_1009744
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3360
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020852	Metagenome / Metatranscriptome	221	Y
F032045	Metagenome / Metatranscriptome	181	Y
F050396	Metagenome / Metatranscriptome	145	Y
F073416	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181400_10097441	F020852	N/A	MLTLKNKTTTTTHADEDYSCTVTRWDADGFAECNGSSIWDYEGDLRVGVSAVEVHEMTYEDGDTSTMIYVEHNAGGTGDWRIYTDDGFEESISVALGFDVTFTEQGMQDDGVASLET
Ga0181400_100974410	F073416	GAGG	MVDQLQLIERLEGVRRIIHNNTDLADVILLGMIEEAEQKVAQFESDIQEEFAFSGS
Ga0181400_10097442	F050396	GGAGG	MRYELNTKQARKLVATVLAEKNASFWNSWTNVVWKDNAKDAAKRNLCFGIVGERFTEGDCKWLKLLVGCDKVHTTFGGRYLRLVGVKYES
Ga0181400_10097446	F032045	GGAGG	MATYNKKAVDEAIKKDPRIKGKEAKLIHALLKGHK