NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187219_1027988

Scaffold Ga0187219_1027988


Overview

Basic Information
Taxon OID3300017751 Open in IMG/M
Scaffold IDGa0187219_1027988 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1996
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035770Metagenome171Y
F087206Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0187219_10279885F087206AGGGGGMSNLHNEQEMEDIQNYVLEQDRKGLLEDEINYISFANGLHPDDDRDEILEFIAESILYEKNVGGLI
Ga0187219_10279886F035770AGGMKPYKTITFAMAEFSYARHLRDELGHTGEIIYPNKDMSKQDRDGSWLLLTITGERLGTVSPNGTVRTT

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