NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187219_1017572

Scaffold Ga0187219_1017572


Overview

Basic Information
Taxon OID3300017751 Open in IMG/M
Scaffold IDGa0187219_1017572 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2654
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084834Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0187219_10175722F084834GAGGMANPIKGAISQLGERAIDTSKGLFSAIRDAFGRESAGNTQIIKSEIQSFPSVLEPTVDNAPLMAVHNTSLEGVLAANEIGGIPSPSIGISDPANLQNFGEISLIMDPKKLNPNMNIYPTDAYTGRQPKGEVNIVNPKQFEERLKADVNLGHMADYAAMFLNKGDPEGADYTLKVINAAIDNNLVKPKDFNNIEKLFEESKKLLGYDRNNMNFLNQYDGLKEYADVRRLLPPKDPYYDDGSRRPDGPYTAQTVLKAMRQGDYGPMYMPASEEYAQNYAGAFRAATSRPFKSIDEVKDARGQIFVEERDKPSQAGTGDVLDSLFSKFNTVKFSLINDLTNKFKKTEVRTRRSKNEDGEIVTTQEPVTRRMGMDTANELLLALGRNDADISRTAAVSEGFVSMDDIPALRDAVNRGGEIMQNAPTKYFEAKPNATMSLSDFDTALVPRNLTENEEVMRIFRENNLPVSTYTDFGPNKDEYREGVMRQMKENLFSVPLAGTVGYGALQGVGEDDGKSGS
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