Scaffold Ga0181393_1013631

Overview

Basic Information

• Taxon OID: 3300017748
• Scaffold ID: Ga0181393_1013631
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2443
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F007611	Metagenome / Metatranscriptome	348	Y
F007827	Metagenome	344	Y
F015994	Metagenome / Metatranscriptome	250	Y
F042624	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181393_101363110	F015994	N/A	LFEKNMTNYELHQVWTEIKEKQESDEWIDQLEKQYNEIQENKYY
Ga0181393_10136314	F007611	N/A	MKKKWITVLDYETARVYQYQVSINKHAEEYIAFKGHRLSNVEWMEHQFHAIITK
Ga0181393_10136316	F007827	N/A	MKLTNKQKRSVKRQVQIDQGVKTPGTRVFVSKKIYTRKKKHKNERN
Ga0181393_10136318	F042624	AGAAG	MKKITRCALGLAILFSSCQKEEELSSRNWSSPTFENFDCNSPVMLGESGTVGFLPGDTDAQIVAKIRDVWNLPDHYVIFLDPETYNSEGGLGTARDINPEYLAFPLHISSVSDKWGHDYYEEYKQDKQAFLDKYTNGEETGGMKICNL
Ga0181393_10136319	F000126	N/A	MRDYSITRKKGEWYNAKVTDSYGNKYQNYFETASEANDWIYYIWEKEEWFNSVDSQELLAKAIQQCKEIDNKSNRRTIL