NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181352_1208909

Scaffold Ga0181352_1208909


Overview

Basic Information
Taxon OID3300017747 Open in IMG/M
Scaffold IDGa0181352_1208909 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020142Metagenome / Metatranscriptome225Y
F034178Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0181352_12089092F020142AGTAGMRRGPKRIEIPGKKWKEKFIHDKKTWHVVHKQDGITYAVAELRPGVVGGAVERFYI
Ga0181352_12089093F034178AGGMKVGDKVTSSKYPGRVFELAWYQEGDATCAIQDEKIRAVVKVS

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