NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181352_1035005

Scaffold Ga0181352_1035005


Overview

Basic Information
Taxon OID3300017747 Open in IMG/M
Scaffold IDGa0181352_1035005 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1504
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006842Metagenome363Y
F011756Metagenome / Metatranscriptome287Y
F018703Metagenome233Y
F022400Metagenome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0181352_10350051F022400AGGMKRTITRSSQRTTLRLVGTGEGESGPVLSPFGPVRAGLTTMQKTKEDQALTELLNSLEKEIAELSIKSCEVLNIFLCDTKHLVEHTSSFSSVTITDDM
Ga0181352_10350052F018703AGGMTKQVEQRIETAKAQAVRQRNYRRARDRALARLSRDYPNVYRTYLEEEMATDEQMGKSWLDIAGRTRSTKHRS
Ga0181352_10350054F011756GGAGGVSEPRYLFGDSYAYNGGYEELIDCNICGKMFDRVEYRSDTCSDCEDEMIKREREGKRL
Ga0181352_10350057F006842N/AYTPAICGDHLVPITECDCVNYLQELKTSAKRLIQLTKEREQLK

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