Scaffold Ga0181352_1035005

Overview

Basic Information

• Taxon OID: 3300017747
• Scaffold ID: Ga0181352_1035005
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1504
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011756	Metagenome / Metatranscriptome	287	Y
F018703	Metagenome	233	Y
F022400	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181352_10350051	F022400	AGG	MKRTITRSSQRTTLRLVGTGEGESGPVLSPFGPVRAGLTTMQKTKEDQALTELLNSLEKEIAELSIKSCEVLNIFLCDTKHLVEHTSSFSSVTITDDM
Ga0181352_10350052	F018703	AGG	MTKQVEQRIETAKAQAVRQRNYRRARDRALARLSRDYPNVYRTYLEEEMATDEQMGKSWLDIAGRTRSTKHRS
Ga0181352_10350054	F011756	GGAGG	VSEPRYLFGDSYAYNGGYEELIDCNICGKMFDRVEYRSDTCSDCEDEMIKREREGKRL
Ga0181352_10350057	F006842	N/A	YTPAICGDHLVPITECDCVNYLQELKTSAKRLIQLTKEREQLK