Scaffold Ga0181352_1034502

Overview

Basic Information

• Taxon OID: 3300017747
• Scaffold ID: Ga0181352_1034502
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1517
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079651	Metagenome / Metatranscriptome	115	N
F088525	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181352_10345022	F088525	N/A	MTLPIRQSELNKVGFTGYFPALSWNQRKQVAALTLNAVGRMQDAFLLEINNVNAVRGITYVADVPPLRAGR
Ga0181352_10345023	F079651	N/A	MANPRRRSRRSSGGMRFGGNILSQVKGVFSKENLTVAGGGVAATVLTNFILSRTKADGTSLLPMPATNVAAAKIAYAVGIPVVGAILTRKFNPSLARGMVFGGLINGIVEAIKGYAPAETKKALGFSEYLEYTPMSALNGTPGYSAINQFS