Scaffold Ga0181352_1017687

Overview

Basic Information

• Taxon OID: 3300017747
• Scaffold ID: Ga0181352_1017687
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2231
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021128	Metagenome	220	N
F065471	Metagenome	127	N
F072259	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181352_10176871	F065471	N/A	MLSIGNDSFSLAVLDQDGKPPETRISNASHAWNIANHLRLANIGRENKRIRIYKAYKMFPPTGYSKLAEKRLPWQSDVNYGQLGFIVDNQKSSYYDVITERQACCTIKSKFGNEKERLVNSENIGIAFDQAIREWPGYLYNTEQDLEEMLLYGKGIGMWDSPMGWMPEHVYLSDLLFPDDIRIDFCNLEEFVRRVRLTPYELYKKIENRAAAEAMGWNVDAAIDAIRFHRAFSNNRKTREDFFRTISEAGFNWSLS
Ga0181352_10176872	F021128	AGG	MKLKNKNLAPVGGFYWRYEIKRDKLTFPAIVYGSTWSSLMQNIQKDYRSNGVELPSNIEQLVEDQICQRQPSDRCWYSDGLGDKIAQVIHTVAKTTDKVLGTKLEHKARGCSSCNKRRNALNSLS
Ga0181352_10176873	F072259	N/A	MSRVFSSNKGIRRYGIQFPENMDDLGIELYCYAISRGQYGRTYCIRQNINISDFKLLSPSEHFLNAVKLQWPTEVSIYNRGYTNTQLIRTLDELCSNVDICLAGAASMGKSFPVGLWIYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLYKCARVQIGKLIDYRHMIVWGGATNDEEKEYDNAIKALAFPSGNEGQKAVDTTRGRKNDRIRLALDELPEMEMGAITSKVNLGANDDVTFIGIGNPSAGDNPHTRWAMPKGCCNFDSVNPDMDKWETDTGVCLFYNGMRSPNFAAPANEPSPFPFLMDRKKQEMMLKLCYGDENAIDYVRNAIGWWPKTGF