Scaffold Ga0181352

Basic Information
Taxon OID	3300017747 Open in IMG/M
Scaffold ID	Ga0181352_1007020 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017747 Open in IMG/M

Scaffold ID

Ga0181352_1007020 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3742
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3742

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.2382	Long. (^o)	-86.2805	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.2382

Long. (^o)

-86.2805

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F065432	Metagenome / Metatranscriptome	127	Y
F101028	Metagenome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181352_10070202	F101028	GAG	MPAEGSVFDGFTSIIAQDADTHPSYLPESVVAESVNRTFRGGINRTRPSIRNIPIIAGDGEAETIVNDILGGSFQGAYPYRSTNFRTSDGILLSVSGVIYFLKIVNNRAFAYKIIEGNDPGMMHTFFVQAEDRAYIQNGYQNAIAWDGVLGTLTANEIQNGDYCEIVSVGTTNFTLIGAPSNTVGVKFTAIITDTQRGTGTGAVKLPAYRLNPYLAKMPIGTIMEYAFGRVFVADRLNQIYASDIIYGGGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMKAMPQIGTNLRGQGELVVLTGNGAFSMDVSLPRSQWNTSNIQRISLLGRGCTSPYLGLANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVENDTPWLKQFASTMFFDNYIISTVSPQTYRAEGVEGLNRYHRGMVVLDLDQSSSPAPDAQLSFRWNGIWTGIRPTQLLTALISGEKRGFGFSFDADNKNRLYEFTIAQGDDYGPNGSRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGEVNSYVDFRADSNPCWSQLKVPTTFGCDPCSPKVTECFPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVNLIGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFSCCQEKYWQYNIVN
Ga0181352_10070205	F065432	GGA	MADTLEEMVELVKGFVGDSGTCSYERGVKAVNQARRLLWNKRAWTTQEEYVQICCVNDCFTLPARYEQIKLAWIGDESASLADEWFNATNAFALQAGNSCHRGIVEVGGLHVLFRDYTTHPYQIGVMAEEAEDIGVELMFEAQDQYDT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181352_1007020

Overview

Ecosystem & Geography

Associated Families

Sequences