NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181352_1003971

Scaffold Ga0181352_1003971


Overview

Basic Information
Taxon OID3300017747 Open in IMG/M
Scaffold IDGa0181352_1003971 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5178
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003038Metagenome / Metatranscriptome511Y
F044374Metagenome / Metatranscriptome154Y
F065559Metagenome / Metatranscriptome127Y
F067648Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0181352_10039711F044374N/AMSRKEKEKEFFAHHMDKFRKAQVTDPFFAIKTAFFQKGKYGRQVQLFEGELKRGEDIYIEFIDIMRDALGKETGIEHAFEDRPLFKYKHNPYFAEEYDVKEGTSSNGDNYFAYTIPLSELMVIMPDGSEITHNLYEKRKAEAPKEQVSLSVFPDFENEFIPKLKDISLDEEESASDILLRIAADFQKLATKMK
Ga0181352_100397110F067648GAGMTRDELKNLINMFQSSDSENHIVAFHAIENSPLDNNELVLLYKFSGQQFAKWKQEIPMTAQRVADVIGDEAIALSSARVLGIITNNKAAKHVIETFLEFFIRDLTSMLGSIGYPMDKVDINVKIRDDGQSTES
Ga0181352_10039713F003038N/AMALSTTDLGSAGSGLPKTITPGNHVLKINSIELEDFKFIDGAYHLMMHVETQPIEGFEGFMIDKDDESKGRYAGQIGRVKASQYAFADGETKTGIKIQRDRSILIFLRTLAHTMELDSWFLEQDGQHDTIEDFVKAFNKTADFRGKFLEFCVAGKEYEGKSGYTNYDMWLPKAEGKKYAFGAIEEGVVIPYDETKHLKKLEVKEVKSFGDDDVFLKPKTSSDFSLD
Ga0181352_10039717F065559N/AMNEINMMATLVKLADLGVTGIKVQYEGSGDSGAIENVVYTTEKMDEDEEAAFDDINDIYVWNKDVSHLQELDSGLSSDIANFVEEQLLNDIEDWWNNDGGFGAVCILIPSGKYKIYNDIRITQIESYFHEGSLIQKTL

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