Basic Information | |
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Taxon OID | 3300017747 Open in IMG/M |
Scaffold ID | Ga0181352_1003971 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5178 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003038 | Metagenome / Metatranscriptome | 511 | Y |
F044374 | Metagenome / Metatranscriptome | 154 | Y |
F065559 | Metagenome / Metatranscriptome | 127 | Y |
F067648 | Metagenome / Metatranscriptome | 125 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181352_10039711 | F044374 | N/A | MSRKEKEKEFFAHHMDKFRKAQVTDPFFAIKTAFFQKGKYGRQVQLFEGELKRGEDIYIEFIDIMRDALGKETGIEHAFEDRPLFKYKHNPYFAEEYDVKEGTSSNGDNYFAYTIPLSELMVIMPDGSEITHNLYEKRKAEAPKEQVSLSVFPDFENEFIPKLKDISLDEEESASDILLRIAADFQKLATKMK |
Ga0181352_100397110 | F067648 | GAG | MTRDELKNLINMFQSSDSENHIVAFHAIENSPLDNNELVLLYKFSGQQFAKWKQEIPMTAQRVADVIGDEAIALSSARVLGIITNNKAAKHVIETFLEFFIRDLTSMLGSIGYPMDKVDINVKIRDDGQSTES |
Ga0181352_10039713 | F003038 | N/A | MALSTTDLGSAGSGLPKTITPGNHVLKINSIELEDFKFIDGAYHLMMHVETQPIEGFEGFMIDKDDESKGRYAGQIGRVKASQYAFADGETKTGIKIQRDRSILIFLRTLAHTMELDSWFLEQDGQHDTIEDFVKAFNKTADFRGKFLEFCVAGKEYEGKSGYTNYDMWLPKAEGKKYAFGAIEEGVVIPYDETKHLKKLEVKEVKSFGDDDVFLKPKTSSDFSLD |
Ga0181352_10039717 | F065559 | N/A | MNEINMMATLVKLADLGVTGIKVQYEGSGDSGAIENVVYTTEKMDEDEEAAFDDINDIYVWNKDVSHLQELDSGLSSDIANFVEEQLLNDIEDWWNNDGGFGAVCILIPSGKYKIYNDIRITQIESYFHEGSLIQKTL |
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