Scaffold Ga0181352_1002946

Overview

Basic Information

• Taxon OID: 3300017747
• Scaffold ID: Ga0181352_1002946
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6115
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076903	Metagenome	117	Y
F098940	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181352_10029461	F098940	GGTGG	MSVQTNADIWIALRDEIRAWAFAEGYGGAVYLSERPTDETIAQYAFQIIPGGDTAMHPRSGVGLLEANVQVVVWWRNLMDPVNQATLRIAGSSGIENAIDGLRQLLIQNTLNDRLTIALTWRSGGVVEPVDDLPGWMRGTETFLCA
Ga0181352_100294610	F076903	N/A	MTDFMLRTDTEAQMDDALEAAEILVEKDVGDGELVLMLVPNCALDRIGPIWPVLDEDGKVIRSGDPRFHANLRVAFELTQEQVDALPTFTPEPGIPYRVWA