NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181352_1000433

Scaffold Ga0181352_1000433


Overview

Basic Information
Taxon OID3300017747 Open in IMG/M
Scaffold IDGa0181352_1000433 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18121
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003038Metagenome / Metatranscriptome511Y
F012010Metagenome / Metatranscriptome284Y
F071153Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0181352_100043315F071153N/AMFSGKLVKKDGKLTYATPQDKLAYDIFISKLEEGQIVEMYVDLANADHSKAQLAKVHACIRELAKESGYTFDEMKDAVKEASGLGGKSFGECSREDLMLAIEAAIEIGEKNFNLNLR
Ga0181352_100043319F012010N/AMTDIFTRLIQEGLTPNTYYVLHCIREKIVPHKSVNKELECKRLQMDHWLTENLELTSKSLIFMEEINGYFKRTKKKTSQDLMGQDFVRNIEKYVEIFPNKKLSSGKYARVNAKNLEAPFRWFFETYDYDWEEIFKATEKYVDEFSIRRYEFMRTAQYFIRKQNIDKSFESDLATYCEIIRSGDDEEQVYFSEKVV
Ga0181352_100043324F003038N/AMGLSTTDLGTGGNGLPKTISPGNHVLKINYVELEDFKFIDGAKHLLLHVETQPIDGFEGFMLDKDDESKGRYAGQIGKVKASQYAYADGETKTGIKIQRDRSILIFLQGLCKTAGINEWFTEQDGKHDTIEDFVEAFNATAPIKDKFLEFCIAGREYEGKSGYTNYDMWLPKAENKKYAYGEVEEGKVITFDESKHLKKLETKEVKSFGDDDDFTTPTKTSSDFSLD

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