NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181389_1036741

Scaffold Ga0181389_1036741


Overview

Basic Information
Taxon OID3300017746 Open in IMG/M
Scaffold IDGa0181389_1036741 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1472
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003807Metagenome467Y
F022658Metagenome / Metatranscriptome213Y
F051963Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0181389_10367411F022658N/AVKIFYESIVSDTSNVNSVDAANYGHALERYEKEWEKALQLMNFYDLNQDAPDGPTTKLEENWTADPDYFNNNRRWF
Ga0181389_10367412F051963AGGAGVALSNLPLVNKAQVVTYLKEVAKVQTPIIEVSSTFPSEDDNIAYGLYVDDVTDNGRSVNQLGIQNCASMYNAEDQFNILYISFQNDPQAPVILNAINNLAGNVNFFDGYTSVEFDRDVTIGQRSEIHNYTFTLTRLEFNNAYQS
Ga0181389_10367414F003807AGGGGGMSPRHLLTNYLEKQMTEQNAVWLKSDDEKLRSLISDEAKMMPMLDNMQATIRQLKSKQQFRLALLNQVLESLNGNTKYNNNNS

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