Scaffold Ga0181389_1007033

Overview

Basic Information

• Taxon OID: 3300017746
• Scaffold ID: Ga0181389_1007033
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3892
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000908	Metagenome / Metatranscriptome	841	Y
F006764	Metagenome	365	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181389_100703311	F006764	AGGGGG	MTDKVDSALYIYDVEFNKIKTIKLKTFLTRVNHTIRNENQIYFALKDDAIKFRKEDND
Ga0181389_10070336	F000908	AGGA	MDNDNLKRIADALEEILRLVKEDQERSRKYMEDQKDE