Scaffold Ga0181427_1067919

Overview

Basic Information

• Taxon OID: 3300017745
• Scaffold ID: Ga0181427_1067919
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 876
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011578	Metagenome	289	N
F018383	Metagenome / Metatranscriptome	235	Y
F023367	Metagenome / Metatranscriptome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181427_10679191	F018383	AGGA	MEKITFNNEQLEFLKFIIQDFEYNDDHERYMIEQIENKIYQAQEN
Ga0181427_10679193	F011578	AGGAG	MITAFFTGVAVAVPTALITMKLLNSSLFISNEELKEANSRISLIINNLDDFREERMKDKMERLGITDKLDERLSTKIK
Ga0181427_10679194	F023367	N/A	LVIIQKHLEEQTMTKTKFIFEEKFISYANVEIYAENEEDARLQFQNGNYQYYDVSDFTEGHELISVKEEEPINYYQGA