Scaffold Ga0181397

Basic Information
Taxon OID	3300017744 Open in IMG/M
Scaffold ID	Ga0181397_1000828 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11377
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

11377

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009993	Metagenome / Metatranscriptome	310	Y
F050398	Metagenome / Metatranscriptome	145	N
F059991	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181397_100082815	F050398	N/A	MAILNFTIRSQDVDFAAQSADDTRQAQKTIKLEQHLKLKYLKLLHIYHNLDNSNISDGDGTSNNTILFAQISFLNGKNSVFFEFQDGKTIEHAGMICLGETIKDEASSVFKDLYKVLHDGKQLLYINQPFSVKLFKLVAVDPAVDNTDLATYNSAASHKIQPISIEEFRGPLDGPGQYISFTFEYQEDTTK
Ga0181397_10008283	F059991	N/A	MSNPQLIHRANENSSLFNTIKARNSKQNVFDYVNEGELNVCPYAKSRVVVNPTTSLNSDGGQTIKFELPNFGLLDDMYLQTEFARGDTNDDTGAKDCFLVDMAGAFTFSKIRVVYNGNTIFETTPEHLVCSLYGRANREQSLVLDGMLGSAILGSANDTHGNLEGRRAMASSFGGQKLSCPLKCWFSESVGRNFDLYSLSSKCFLEVDYRPVLDVHGKAETAADRITYAGSNLICFLNELSPQEISAYQSRNYAPNSVASQLGYTTTLLQESLATPVLATATTKGNTVKINSISGLVRRMYVFATTDSDRASTTEKKYMNVVDISSIKLSANNQTIYEIQDCGIGLDNFDRDAGNGYQTDQFVEMFHNKLIGPCNSAVASDTYKLLDIAVDKTIGSNTGNEFEFPKVKVINFGMNPDDYSSADGALALSQVNVPELEVKFPTGTSGATTLHVVAELITLSTYNVSATGQINFKSISE
Ga0181397_10008287	F009993	N/A	MPRLVKYTTSGFVDNVPDQALAVIEHASLFYIIDQRFKGVNKYIAFAVAGAGYEMFIDGLKKRSAPEGFSASNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181397_1000828

Overview

Ecosystem & Geography

Associated Families

Sequences