NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181402_1118666

Scaffold Ga0181402_1118666


Overview

Basic Information
Taxon OID3300017743 Open in IMG/M
Scaffold IDGa0181402_1118666 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)678
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038858Metagenome / Metatranscriptome165Y
F079948Metagenome / Metatranscriptome115N
F090327Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0181402_11186661F079948AGGAGGMETVKAPINERVATKVMPLTKWFVEQYFQTFELMSSDPRFKKLP
Ga0181402_11186662F038858GGAMKRIEKVGEQLVKAFTLPIRVCVGIYKCVEKATPDTLEMPFEIKRKEETNGDSKSTN
Ga0181402_11186664F090327N/ADLNLFAVKKPQAIFDEWMKTIDPFEDDSPYPLRISQITRAWEKIDNVGKHNYLTRQTNPRYKIMLEQMRGD

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