NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187218_1079930

Scaffold Ga0187218_1079930


Overview

Basic Information
Taxon OID3300017737 Open in IMG/M
Scaffold IDGa0187218_1079930 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)794
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003769Metagenome / Metatranscriptome469Y
F077379Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0187218_10799301F077379N/AYMLTQKALNKKLTATLCTTTNTIFVHKNNKAHLQYTVNSEKVIHNANAQQLQAFYKLPSTVMQKTKNFNKLINTNLLKQLFTTH
Ga0187218_10799302F003769AGGGGGMQQLKTITVKTSNKVESVHVDTLYAVIENCYNSLQVIEADCTSANYFCASANIFAQLQYLYAENECNDYVSLESVMDVFANNVTYYDEEYSLYESVVQNTAMQKIKLQDYACLSN

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