Scaffold Ga0181365_1079522

Overview

Basic Information

• Taxon OID: 3300017736
• Scaffold ID: Ga0181365_1079522
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 804
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025017	Metagenome / Metatranscriptome	203	N
F031793	Metagenome / Metatranscriptome	181	Y
F041159	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181365_10795221	F041159	N/A	MASQAQKLNYVDGKLGAPTNGQQTTRILFNTIEAPGTTSSLVFFKSFQGLTNGQTN
Ga0181365_10795222	F031793	GGAG	MVIKTIWLAQLSSTGVLQTFGSIVQQTISIIVGNQTVVKNLPIQFNQGVSGQAYDRLHENGGAEVNQVAASTSTAQLLMPVEIRLLTDIVIPPQVSFEVRVDSNGGVYEGGAVVCALSGYGKIFSAGNSF
Ga0181365_10795223	F025017	N/A	MANGINMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIIL