Basic Information | |
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Taxon OID | 3300017736 Open in IMG/M |
Scaffold ID | Ga0181365_1010085 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2349 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | 108 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002843 | Metagenome / Metatranscriptome | 526 | Y |
F023295 | Metagenome / Metatranscriptome | 210 | Y |
F048257 | Metagenome | 148 | N |
F063343 | Metagenome | 129 | Y |
F067530 | Metagenome / Metatranscriptome | 125 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181365_10100851 | F002843 | N/A | IVPVDIVAVQVNQNNSLFVTTGVDYDSDGTIVGSEITSQYTLNPGDSLEGQPTEVVSIANALWTPAVVAAYKAANPAPDNSVPVS |
Ga0181365_10100852 | F067530 | N/A | MQTLTLTLDPATANALITALEVARRQGDFAVARTAVGIISELIRQDEEFKKLNPPVQVQTAE |
Ga0181365_10100855 | F023295 | AGGCGG | MLLSMLHGIGCQTRVILVPDGQPVQLAEPVRAKVFAFDATGKPVPSSNKVILPAGWYVLPRK |
Ga0181365_10100856 | F063343 | N/A | MNYLILLGILGLFIFGNKVRTNWVSGIKSTLIKLMIPGADRRLFSGFVQATFSWVRNPASWVRVFNWTGVSAGINGLGGVGGGTLISRRHVLFANHVPYPARPIDIFFVNKDSRTFNYKVTNVQQVGSTDIAIGTLDKDADPSLIVYRVLPDNWLQYIANKPVPLTATYIAAGITTPIQTFVLPVLYTGQDRKVSTADVININLAGNASVSIPAFEPARAFGDGVRGGDSGNPIFAMLGDELVLLGGWYTGADGDATVGTFPWLLYQKSAIEKIMGMKLQVADMSGLTRIA |
Ga0181365_10100857 | F048257 | N/A | MIAFPSSVAARKLIKGENYTESAYWVLKRTLLIRSGLSLAGEKKGIWKKSLYGSLAVQAFVTAWTATHMDEPVASLPSGEVAVQKDVLGILGTYLLRSAIVGTGLWLSGERKNLTRN |
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